PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_34715
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 169aa    MW: 18567.2 Da    PI: 10.9182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_34715genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1861111155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  PEQU_34715  61 PVYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALNIKG 111
                 68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-1361111IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2162120IPR016177DNA-binding domain
SMARTSM003801.1E-3462125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3162120IPR001471AP2/ERF domain
PROSITE profilePS5103222.66962119IPR001471AP2/ERF domain
PRINTSPR003671.0E-96374IPR001471AP2/ERF domain
CDDcd000184.10E-2863121No hitNo description
PRINTSPR003671.0E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
LCDKNRIFLY IVMADQVSSS EQWSSLPSPS SSPPSFSSPL PPVISSVAGG SKRAREQSKH  60
PVYHGVRMRN WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAALNIK GSAAILNFPE  120
LAASLPHXXX XXXXXXXXXX XXXXXXXXXX XGGVAGCCGS FSRGVGRNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1657119263ATERF1
3gcc_A3e-1657119263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125819.12e-43PREDICTED: dehydration-responsive element-binding protein 3-like
TrEMBLM4E3I02e-43M4E3I0_BRARP; Uncharacterized protein
STRINGBra023332.1-P6e-43(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-44ERF family protein